Sorry, no online dictionaries contain the exact phrase molecular similarity.
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Reverse dictionary results:
1. isomerism
2. symmetrical
3. cohesion
4. isomorphism
5. proportion
6. periodicity
7. confrontation
8. francium
9. homoeomeria
10. individuality
11. map
12. metensomatosis
13. msp
14. skew
15. skewness
16. vicinal
17. absorb
18. absorption
19. heat
20. het
21. link
22. metamerism
23. affinity
24. contrast
25. homologous
26. homology
27. identity
28. parallel
29. parity
30. proportioned
31. proportions
32. similarities
33. symmetry
34. abc
35. air
36. airs
37. analysis
38. anything
39. appropriation
40. asa

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You can look up the words in the phrase individually using these links:   molecular ?   similarity ?
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