Might mean (unverified): Below the gum line area.
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We found 2 dictionaries that define the word subgingivally:

General (1 matching dictionary)
  1. subgingivally: Wiktionary

Medicine (1 matching dictionary)
  1. subgingivally: Merriam-Webster Medical Dictionary

Definitions from Wiktionary (subgingivally)

adverb:  In a subgingival manner; beneath the gingival margin.

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