Usually means: One million base pairs DNA.
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We found 10 dictionaries that define the word megabase:

General (3 matching dictionaries)
  1. megabase: Wiktionary
  2. megabase: Dictionary.com
  3. Megabase: Wikipedia, the Free Encyclopedia

Medicine (4 matching dictionaries)
  1. Megabase: MedTerms.com Medical Dictionary
  2. online medical dictionary (No longer online)
  3. Hypermedia Glossary Of Genetic Terms (No longer online)
  4. Megabase: Drug Medical Dictionary

Science (3 matching dictionaries)
  1. Drug Discovery and Development (No longer online)
  2. DOE Genome Glossary (No longer online)
  3. How Many? A Dictionary of Units of Measurement (No longer online)

Definitions from Wiktionary (megabase)

noun:  A length of nucleic acid containing one million nucleotides (bases if single-stranded, base pairs if double-stranded)

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