Sorry, no online dictionaries contain the exact phrase microbial fauna.
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Reverse dictionary results:
1. microbiota
 2. flora
3. zoology
4. affinity
5. allopatric
6. anatidae
7. axenic
8. bacteriology
9. bio-
10. biodiversity
 11. bioengineering
12. biohazard
13. biopiracy
14. bioremediation
15. biotope
16. blackleg
17. botany
18. bud
19. calymmatobacterium
20. clade
 21. crown gall
22. dex
23. ecosystem
24. ectoderm
25. embryo
26. endoderm
27. evolution
28. foot
29. genus
30. genus calymmatobacterium
 31. germ
32. gnotobiology
33. gnotobiosis
34. granville wilt
35. intergrade
36. lamarckism
37. mesoderm
38. microbe
39. microbicide
40. microflora

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You can look up the words in the phrase individually using these links:   microbial ?   fauna ?
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micr*to search for words beginning with micr, or
*aunato search for words ending with auna
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